Wednesday 24 December 2014

Video Recording at Hundred Billion frames per second

I work in TV and Video media. And record at 25 frames per second. Enough to fool the eye into thinking it is continuous. Even with 11 frames one can create a sense of continuity.
But when we want to observe transient events of smaller time scales, something that happens in much less than 1/25th of a second, my cameras are not much of use.
In early 21st century, a Japanese scientist claimed to reach a speed of 10 million frames per second, with CMOS technology. Not bad.
But now there is a report on recording of a hundred billion frames per second. The new technology will expose physical, chemical and biological phenomena that are not amenable to perception by our neuronal mechanisms. Since fluorescent and luminescent objects are captured by the camera, many researchers will want to use it. Take a look at the description in a recent paper. Nature 516, 74–77 (04 December 2014). Now we can see a video of a laser pulse moving in air and resin at -  http://www.nature.com/nature/journal/v516/n7529/fig_tab/nature14005_SV4.html

Liquid inclusions make soft solids stiffer

When you include liquid drops into a soft solid like a gel, the anticipation is that it will become softer. But if you keep reducing the radius of the drops, then there comes a time when it will actually become stiffer.
This rather counter-intuitive result was published a recent paper in Nature Physics (Published online on 15 December 2014) by collaborating scientists from three countries. The phenomenon occurs only when the radius of the droplets become smaller than the elastocapillary length (the ratio of surface tension of the liquid solid interface and the young's modulus of the solid).
Besides designing new composites, the result has implications in biology where such phenomena may be rampant, without being noticed by biologists. 

Thursday 15 May 2014

Radio stations disrupt magnetic navigation in birds

Pigeons and migratory birds are known to use the earth's magnetic field for navigation. But experiments in this area of study are found to be difficult to replicate. There are times when researchers fail to see any evidence of magnetic navigation in birds. A recent paper in Nature 509353–356 (2014) gives us a clue why: radio waves!

Radio waves in the range of 50 kHz to 5 MHz seem to suppress the ability of the birds to use the magnetic field. Our radio stations seem to disrupt a sensibility that has evolved over millions of years. 

Strange, though it may seem, it becomes quite understandable when we consider that there are radio waves that are not produced by radio stations. Changes in solar activity induces changes in the ionosphere of the earth and cause the whistlers - strange sounds that you hear when you try and tune amplitude modulated (AM) radio. This is the time when there are also magnetic storms and using magnetic navigation would cause the birds to go astray anyway. So shutting down the sense of magnetic navigation momentarily is, in a way, useful. 

But consider that the radio stations are mostly 24/7 - unlike whistlers. :(


Monday 5 May 2014

Does an injection from a female doctor hurt more?

Probably. If we extrapolate from a recent paper in Nature Methods (doi:10.1038/nmeth.2935).
  • Jeffrey S Mogil's pain research lab was initially flummoxed by the results of their experiments: they could not get consistent results when testing pain behaviour in rodents. First they thought that it was because of the experimenters' presence that changed the behaviour of the rodents. Even human cutouts produced a change in the exhibition of pain. But that did not explain the results. When the male experimenter injected pain producing chemicals into the foot pads of the rodents they demonstrated less pain. Is it some smell that they were responding to? Scientists tested again in the presence of T-shirts worn by male and female researchers. And reconfirmed the results using smells of male and female rodents. The male smell did reduce the pain behaviour! 
    • Don't be too hasty to take the sweat shirts of male athletes to surgical aftercare yet. It is only the behaviour that the scientists could observe. Not the pain that is felt
        • Perhaps the rodents are showing less pain in the presence of male because display of pain would be construed as a weakness. Perhaps there could be evolutionary pressures to display less pain in the presence of males, though the pain actually felt is the same.

Thursday 24 April 2014

Izumo 1 meets Juno: Fertility Rites and Name Changes

On the surface of the sperm cells there are these proteins called Izumo 1. Sperms that do not have these proteins cannot fuse with the egg to fertilise it. Scientists who discovered this in 2005 named the protein Izumo 1 after a Japanese marriage shrine.

Now scientists in UK have identified the protein on the egg which docks with Izumo 1. And they are calling it Juno, after the Roman goddess of fertility. Without Juno on eggs, Izumo 1 on sperm is helpless and cannot enter the egg. (Nature 508, 483–487 (24 April 2014) doi:10.1038/nature13203) It takes both Izumo 1 and Juno for mammals to reproduce.

Juno protein on eggs was well known as an essential factor in female fertility. It was called Folate receptor 4 or Folr4 by scientists. In fact, the protein is found in other types of cells in the immune system. Yet scientists are keen to change the name of the protein Folr4 to Juno. Is it just a religious attitude or the need to use a bit of fancy terminology? After all, terms like chaos and quarks have captured public imagination and helped to get public funding. So why not change an insipid name like Folr4 to an inspired one, like Juno?

Monday 20 January 2014

Nature emulating humans

Most of the early manmade polymers consisted of a repeating monomers. In proteins - the biological polymers - this is rare. You could have up to different 20 amino acids in a protein. So when you find a  single monomer based protein, you will sit up and take note. Proteins having long stretches of amino acids like lycine and glutamate are well documented. But when a protein of more than 300 amino acids has only the amino acid called serine - well, it becomes serious.
Serine sequences are coded with a lot of degeneracy: there are six different three letter codes for serine So minor changes in the DNA code at single nucleotide level does not make much difference to the ultimate serine sequence. So it is highly conserved.
And usually, if a protein is highly conserved, it must have some major function. The paper which reports this in a recent issue of the journal Heredity does not explore the functions of the protein. But knowing the central role of the amino acid serine play in the synthesis of nucleotides and also as a precursor to some amino acids, we should expect that a protein made of serine too has very important functions in the cell.
The homopolymer of serine was discovered in a soil amoeba called Dyctyostelium. Dyctyostelium goes through a life cycle consisting of unicellular and multi-cellular  forms and has been used as a model for understanding social organisation. So we should expect that such sequences exist in many other organisms soon.
 Heredity 112, 215-218 (February 2014) | doi:10.1038/hdy.2013.96

Sunday 19 January 2014

Electricity consumers to become electricity producers

Electricity generation from solar and wind energy has been going up at exponential rates in our country in recent years. These sources of electricity are intermittent – only when the sun shines or the wind blows. So storage of energy before distribution as per demand has been posing a problem. 
A study published in Current Science last year pointed out that the problems with inverters are the main cause of inefficient functioning of some of the solar power stations in India. Less costly and more efficient energy storage may soon increase the investment in solar and wind energy projects – if a recent paper on flow batteries in Nature is of any indication. 
Scientists knew that flow batteries where two ionic components are separated by a thin membrane which allows the flow of ions across is a good basis for electrical energy storage devices. But such batteries used metallic compounds and the cost was not worth the efficiency of such batteries. Now a collaborative experiment between American and Dutch scientists have come up with an alternative to metallic electrochemicals for the purpose – quinones.
The technique involves movement of charges across membranes. For the anode, you take quinones which goes through hydroxylation and for the cathode, take bromine which cycles to bromide. Each charge-discharge cycle reduces the efficiency only minimally.
There are many quinones in nature and they can be produced easily. So the cost will be much lesser than the earlier metal based attempts at flow batteries. Moreover, these carbon compounds can hold twice the amount of charge compared to metal based flow batteries. Their efficiency and effectiveness can be modulated by minor changes in different parts of the quinone molecule.
The results come at a time when dye based solar cells are promising to bring down the costs of harvesting solar energy. Combined with low cost, quinone based storage, it may soon be possible that every house becomes a producer of electricity.
Nature, 505, 195–198 (09 January 2014) doi:10.1038/nature12909

Thursday 16 January 2014

Light weight electronics flexible enough to wrap around a human hair

Wrist watch sized communication devices advertised in TV now-a-days will soon be so totally unfashionable. Ultra thin electronics that is extremely flexible and bio-compatible can now be developed very easily.
The key component is parylene, a class of polymers that we have known for the last few decades. It is highly stable, corrosion resistant and can form a thin film. So it has been used as a coating. It is biocompatible and has low friction. So it has been used in catheters and acupuncture needles.
Scientists have now succeeded in making electronics on parylene. Electronics  - sensors, transistors and circuits - is first put on a soluble polymer substrate. Parylene is thermally evaporated on to this substrate. 
The parylene film is released from the carrier substrate by simply dissolving the polymer. Thus you can get a 1-μm thick parylene film containing the electronics!
Electronics of this sort can easily be transferred on any object, surface and even on biological tissues like human skin and plant leaves. The scientists have even tried to put a transparent electronics on top of contact lenses to measure the pressure inside the eye, to detect glaucoma to demonstrate the concept.
A large spectrum of possibilities open up - including ultralight solar cells, implantable devices, rollable and transparent displays, smart-skin and electronic textiles.
To know more about the technique, see the latest issue of Nature Communications.

Nature Communications 5, doi:10.1038/ncomms3982, 07 January 2014

Monday 13 January 2014

Smaller brothers will be watching you

Imagine, google map updating itself every hour. Imagine if it had a resolution of one square meter on the ground. When an agricultural field is harvested, it would look different – almost real time. You could see the cloud cover changing. You could track the development of a forest fire. Imagine!
Of course right now, if you look at IISER Pune campus, for example, you will see what it was about a year ago. All that might indeed change. Imagine 24 satellites taking continuous photographs and another set of 24 satellites taking videos as they go by. 
If you are anxious about the big brother watching, here comes your world of paranoia. But if you are an enthusiast of military, government and big corporate technologies going commercial, and available to citizens, you may be overjoyed.
In any case, the traffic in outer space is going to be heavy from 2014. The manufacturing techniques used in automobile industry is being applied to satellites: cheaper, lighter, smaller satellites (some weighing as low as 5 kg) will soon be deployed by companies for getting better high resolution images of the earth in a continuous manner.

Nature 505, 143–144 (09 January 2014) doi:10.1038/505143a

Monday 6 January 2014

When I itches, I scratches

Like the phenomenon of yawning, scientists are fascinated by itching. Itch, like the sensation of burning and pain, are mediated by C fibres of the nervous system - thin, unmyelinated axons found in the peripheral nervous system as well as in the tract that goes up from spinal chord to Thalamus.
It is well known that when a mosquito bites you, histamine is released locally and that it is this histamine that makes you scratch. But in a recent review on the topic in Nature Neuroscience Reviews, you will find a lot more interesting information - including the fact that all itches are not induced by local histamine release.

Nature Reviews Neuroscience 15, 19–31 (2014) doi:10.1038/nrn3641 Published online 20 December 2013

Friday 3 January 2014

Cameras inspired by Insect Eyes

Popular expositions tend to use camera as a metaphor to understand the functioning of eyes. Now let's turn the table 180 degrees: design a camera based on insect eyes.
Insects, along with the larger group called arthropods (creatures with jointed legs including lobsters and such) have compound eyes. Each eye is made of a large number of simpler units called ommatidia arranged to form an approximately hemispherical surface. This gives a larger field of vision - 160 to 180 degrees - high sensitivity to motion with infinite depth of field. Try catching a housefly or swatting a mosquito on a hot afternoon to appreciate the usefulness of such eyes to insects.
The inventors used recently developed stretchable electronics. They arranged 256 tiny lenses on a 15 mm square elastomer and molded it to a hemisphere to get a compound camera with 180 working lenses! Deformable silicon photodetectors held together by filaments of metal help to integrate the images with appropriate algorithms and computation. Cute, isn't it?
But we still have a long way to go to match the eyes of dragon flies - they have some 28,000 ommatidia in their compound eyes!

Nature 497, 95–99 (2013) doi:10.1038/nature12083

Thursday 2 January 2014

Lamarck resurrected: Inheritance of acquired characteristics

Nearly two centuries ago, Lamarck propounded the theory of inheritance of characteristics acquired by parents in their life time, by progeny. The textbook example of his explanation of evolution claims that giraffe got its long neck by trying to eat leaves from tall trees, generation after generation.
But widespread acceptance of ideas from Darwin, Mendel and the science of molecular biology tolled the death knell of Lamrck's theory. Now it appears that Lamarck will come back, making a grand entry through the science of epigenetics.
Epigenetics is usually about how genes are switched on or off depending on the environment of an organism. Nobody knew that the genes that are switched on will continue to be switched on in the progeny also. But new results show that the epigenetic modifications can and do, pass from one generation to next.
Scientists experimented with mice, giving them mild shocks along with specific smells till they started associating the smell with fear of shock. The children and grandchildren of these mice when exposed to the smell, exhibited fear. Demonstrating that environmental stresses undergone by parents prepare the unborn children to face the same stresses.
Similar studies in  the recent years suggest that biological evolution and cultural evolution are a continuum. It appears that in this century, we may see more biologists entering socio-cultural research.

Nature eurosci. http://dx.doi.org/10.1038/nn.3594(2013)

Wednesday 1 January 2014

Sex and violence

A spate of movies with sex and violence has perhaps made us believe that the two go together. Yet new scientific discoveries would have us believe otherwise. 
Indeed, if you put two male fruit flies together, along with a female, you will perhaps find a lot of aggressive behaviour. Yes, even in the lowly drosophila, the fruit fly. And that is quite understandable, given the competition for reproduction.
But if you put males that have had extended contact with females, scientists find reduced aggressive behaviour - even the presence of new females do not elicit violence between the males
It appears that previous social contact with females can reduce aggressive behaviour. This reduction in the violent impulse seem to be related to a specific set of neurons in male brains which is activated through pheromones that they come into contact when housed with females.
That is the case of fruit flies. But what about humans? What would you expect to find in post puberty boys-only schools if the result hold true for Homo sapiens?

Nature Neuroscience 17, 89–96 (2014) doi:10.1038/nn.3594
Nature Neuroscience, 17, 81–88 (2014) doi:10.1038/nn.3581